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Schmit, J. P., J. F. Murphy, and G. M. Mueller. 1999. Macrofungal diversity in a temperate oak forest: A test of species richness estimators. Canadian Journal of Botany 77:1014-1027.
Mueller, G. M., Q.-X. Wu, Y.-Q. Huang, S.-Y. Guo, R. Aldana Gomez, and R. Vilgalys. 2001. Assessing biogeographic relationships between North American and Chinese macrofungi based on molecular data. Journal of Biogeography 28:271-281.
Moskovits, D. K., C. Fialkowski, G. M. Mueller, and T. A. Sullivan. 2002. Chicago Wilderness: A new force in urban conservation. Annals of Missouri Botanical Garden 89:153-163.
Mueller, G. M., G. F. Bills, and M. S. Foster, eds. 2004. Biodiversity of Fungi: Inventory and Monitoring Methods. Elsevier Academic Press, San Diego, Calif. 777 pp.
Fischbein, C. S. Aks, and G. M. Mueller. 2004/2005. Mushroom poisoning. Pages 533-540, In: Erickson, T. B., W. R. Ahrens, S. E. Aks, C. R. Baum, and L. Ling, eds. Pediatric Toxicology: Diagnosis and Management of the Poisoned Child. McGraw-Hill Press.
Halling, R. E. and G. M. Mueller. 2005. Common Mushrooms of the Talamanca Mountains, Costa Rica. New York Botanical Garden Press, New York. 197 pp.
Schmit, J. P., G. M. Mueller, Y.-Q. Huang, P. R. Leacock, J. L. Mata, and Q.-X. Wu. 2005. Assessment of tree species richness as a surrogate for macrofungal species richness. Biological Conservation 121:99-110.
Hawksworth, D. L. and G. M. Mueller. 2005. Fungal communities: Their diversity and distribution. Pp. 27-37. In: J. Dighton, J. White, and P. Oudemans eds. The Fungal Community: Its Organization and Role in the Ecosystem, 3rd ed. CRC Taylor and Francis, New York.
Mueller, G. M. and J. P. Schmit. 2007. Fungal biodiversity: What do we know? What can we predict? Biodiversity and Conservation 16:1-5.
Lumbsch, H. T., P. K. Buchanan, T. W. May and G. M. Mueller, eds. 2008. Phylogeography and biogeography of fungi. Mycological Research 112:423-484.
Avis, P. G., G. M. Mueller, and J. Lussenhop. 2008. Ectomycorrhizal fungal communities in two North American oak forests respond at larger spatial scales to nitrogen addition. New Phytologist 179: 472–483.
McFarland J. and G. M. Mueller. 2009. Edible Wild Mushrooms of Illinois and Surrounding States: A Field-to-Kitchen Guide. University of Illinois Press. Champaign, Ill. 256 pp.